Package index • fastRanges

Core overlap API

fast_find_overlaps(): Find Overlaps with Deterministic Multithreading
fast_count_overlaps(): Count Overlaps
fast_overlaps_any(): Overlap Existence per Query
fast_self_overlaps(): Self Overlaps
fast_cluster_overlaps(): Cluster Overlapping Ranges
fast_window_count_overlaps(): Windowed Overlap Counts

Join API

fast_overlap_join(): Join Ranges by Overlap
fast_inner_overlap_join(): Inner Overlap Join
fast_left_overlap_join(): Left Overlap Join
fast_semi_overlap_join(): Semi Overlap Join
fast_anti_overlap_join(): Anti Overlap Join

Index and Iteration

fast_build_index(): Build a Reusable Subject Index
fast_save_index(): Save a Reusable Subject Index
fast_load_index(): Load a Reusable Subject Index
fast_index_stats(): Index Summary Statistics
fast_find_overlaps_iter(): Create an Overlap Iterator
fast_iter_has_next(): Check if an Iterator Has Remaining Chunks
fast_iter_next(): Advance an Overlap Iterator
fast_iter_reset(): Reset an Overlap Iterator
fast_iter_collect(): Collect All Iterator Chunks

Nearest and Directional

fast_nearest(): Nearest Subject Range per Query
fast_distance_to_nearest(): Distance to Nearest Subject Range
fast_precede(): Precede Query Ranges
fast_follow(): Follow Query Ranges

Aggregation and Coverage

fast_count_overlaps_by_group(): Count Overlaps by Subject Group
fast_overlap_aggregate(): Aggregate Subject Metadata Over Overlaps
fast_coverage(): Coverage Across Ranges
fast_tile_coverage(): Tile-Based Coverage Summary

Range Algebra

fast_reduce(): Reduce Overlapping Ranges
fast_disjoin(): Disjoin Ranges
fast_gaps(): Gaps Between Ranges
fast_range_union(): Union of Two Range Sets
fast_range_intersect(): Intersection of Two Range Sets
fast_range_setdiff(): Set Difference of Two Range Sets

Utilities

fast_default_threads(): Default Thread Count

Data

fast_ranges_example: Example Genomic Ranges for Documentation, Tests, and Tutorials