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add_taxonomy_columns()
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Add ncbi taxonomy levels to ncbi protein accession |
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filter_blast_hits()
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Filter blast hits |
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format_fasta_headers()
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Format fasta headers |
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genbank2uid_tbl()
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A Wrapper function around taxize::genbank2uid. |
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get_blast_outformat_7_colnames()
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Get blast output format 7 column names |
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get_query_cov()
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Calculate % query coverage. |
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get_subj_cov()
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Calculate % subject coverage. |
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get_taxon_rank()
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Get ncbi phylogeny level for a given ncbi taxonomy id. |
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remove_redundant_hits()
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Remove redundant hits from blast tabular output |
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subset_bstringset()
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Get records from BStringset |
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tidy_taxonomy_tree()
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Assign (NCBI) taxonomy levels to phylo convertible tibble. |
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tips_by_clade()
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Retrieve tree tips by clade (node) number from a phylogenetic tree. |