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Example RNA-seq count matrix shipped with VISTA

count_data.Rd

A count matrix derived from the Bioconductor airway dataset and formatted for VISTA examples. The first column stores Ensembl gene IDs; the remaining columns are sample-level counts.

Usage

data(count_data)

Format

A tibble with 63,677 rows and 9 columns.

gene_id

Character column storing Ensembl gene identifiers.

SRR1039508

Numeric count values for airway sample SRR1039508.

SRR1039509

Numeric count values for airway sample SRR1039509.

SRR1039512

Numeric count values for airway sample SRR1039512.

SRR1039513

Numeric count values for airway sample SRR1039513.

SRR1039516

Numeric count values for airway sample SRR1039516.

SRR1039517

Numeric count values for airway sample SRR1039517.

SRR1039520

Numeric count values for airway sample SRR1039520.

SRR1039521

Numeric count values for airway sample SRR1039521.

Source

Derived from the airway Bioconductor dataset.