Save VISTA tabular outputs to disk — save_vista

Exports selected data components from a VISTA object to CSV/TSV/RDS/XLSX.

Usage

save_vista_data(
  x,
  what = c("comparison", "comparisons", "norm_counts", "sample_info", "row_data",
    "deg_summary", "cutoffs"),
  file,
  sample_comparison = NULL,
  format = NULL,
  include_rownames = TRUE
)

Arguments

x: A VISTA object.
what: Character vector specifying which object(s) to export. Supported values are "comparison", "comparisons", "norm_counts", "sample_info", "row_data", "deg_summary", and "cutoffs".
file: Output file path.
sample_comparison: Optional comparison name used when what includes "comparison". Defaults to the first comparison in comparisons(x).
format: Output format. One of "csv", "tsv", "rds", "xlsx". If NULL, inferred from file extension.
include_rownames: Logical; include meaningful row identifiers (e.g., gene IDs or sample names) as explicit columns where applicable.

Value

Invisibly, the normalized output file path.

Examples

v <- example_vista()
save_vista_data(v, what = "comparison", file = tempfile(fileext = ".csv"), format = "csv")