Set active DE source in a VISTA object — set_de_source • VISTA

Switches the DE result source used by all downstream VISTA plotting and accessor functions that read the active metadata slots.

Usage

set_de_source(
  object,
  source = c("deseq2", "edger", "limma", "consensus", "active")
)

Arguments

object: A VISTA object.
source: One of "active", "deseq2", "edger", "limma", or "consensus". When "active", the currently active DE source is kept.

Value

A modified VISTA object with updated active DE source.

Examples

v <- example_vista(method = "both")
#> estimating size factors
#> estimating dispersions
#> gene-wise dispersion estimates
#> mean-dispersion relationship
#> final dispersion estimates
#> fitting model and testing
v <- set_de_source(v, "edger")
names(comparisons(v, source = "active"))
#> [1] "treatment1_VS_control"