Sample metadata accompanying the VISTA airway example counts
sample_metadata.RdMetadata describing each column in count_data, including friendly sample
names and the experimental group assignment used throughout the vignettes and
tests.
Usage
data(sample_metadata)Format
A tibble with 8 rows and 13 columns:
- sample_names
Character identifiers matching the column names in
count_data.- groups
Group labels used in examples (
"control","treatment1").- cond_long
Long-form condition labels (
"control","treatment1").- cond_short
Short-form condition labels (
"CTRL","TREAT1").- SampleName
Original sample label from the airway colData.
- dex
Original airway treatment labels (
"untrt"/"trt").- cell
Donor/cell-line identifiers from airway.
- albut
Original airway albuterol indicator.
- Run
SRA run identifier (also copied into
sample_names).- avgLength
Average transcript length metadata from airway.
- Experiment
SRA experiment accession from airway.
- Sample
SRA sample accession from airway.
- BioSample
NCBI BioSample accession from airway.